Standard library of Runnables

Several Runnables are included in the standard eHive distribution, providing a library of components that can be helpful when creating pipelines. All of these are located in the directory modules/Bio/EnsEMBL/Hive/RunnableDB/. In addition, there are Runnables included with the examples under modules/Bio/EnsEMBL/Hive/Examples/. Although those are written to fit into specific example pipelines to illustrate specific eHive concepts, you may find them useful in your own pipelines.

The included examples are:

• Bio::EnsEMBL::Hive::RunnableDB::DatabaseDumper

• Bio::EnsEMBL::Hive::RunnableDB::DbCmd

• Bio::EnsEMBL::Hive::RunnableDB::Dummy

• Bio::EnsEMBL::Hive::RunnableDB::FastaFactory

• Bio::EnsEMBL::Hive::RunnableDB::JobFactory

• Bio::EnsEMBL::Hive::RunnableDB::MySQLTransfer

• Bio::EnsEMBL::Hive::RunnableDB::NotifyByEmail

• Bio::EnsEMBL::Hive::RunnableDB::SlackNotification

• Bio::EnsEMBL::Hive::RunnableDB::SqlCmd

• Bio::EnsEMBL::Hive::RunnableDB::SqlHealthcheck

• Bio::EnsEMBL::Hive::RunnableDB::SystemCmd