Bio::EnsEMBL::SeqRegionSynonym Class Reference

Inheritance diagram for Bio::EnsEMBL::SeqRegionSynonym:

Public Member Functions
public Bio::EnsEMBL::SeqRegionSynonym	new ()
public	name ()
public	external_db_id ()
public	seq_region_id ()
public	dbname ()
public	db_display_name ()
public	summary_as_hash ()
Public Member Functions inherited from Bio::EnsEMBL::Storable
public Bio::EnsEMBL::Storable	new ()
public Instance	new_fast ()
public Int	dbID ()
public Bio::EnsEMBL::DBSQL::BaseAdaptor	adaptor ()
public Boolean	is_stored ()
public	get_all_DAS_Features ()

Detailed Description

Synopsis

Description

This object holds information about alternative name to
Ensembl seq regions.

Definition at line 16 of file SeqRegionSynonym.pm.

Member Function Documentation

db_display_name()

public Bio::EnsEMBL::SeqRegionSynonym::db_display_name

(

)

Undocumented method

Code:

dbname()

public Bio::EnsEMBL::SeqRegionSynonym::dbname

(

)

Undocumented method

Code:

external_db_id()

public Bio::EnsEMBL::SeqRegionSynonym::external_db_id

(

)

Undocumented method

Code:

name()

public Bio::EnsEMBL::SeqRegionSynonym::name

(

)

Undocumented method

Code:

new()

public Bio::EnsEMBL::SeqRegionSynonym Bio::EnsEMBL::SeqRegionSynonym::new

(

)

  Args [...] : list of named parameters 
  Example    :

my $srs = new Bio::EnsEMBL::SeqRegionSynonym(
                   -adaptor => $adaptor,
                   -synonym => $alt_name,
                   -external_db_id => 1234
                   -seq_region_id  => 12);

  Description: Creates a new SeqRegionSynonym object
  Returntype : Bio::EnsEMBL::SeqRegionSynonym
  Exceptions : none
  Caller     : Bio::EnsEMBL::SeqRegionSynonymAdaptor
  Status     : At Risk
 

Code:

seq_region_id()

public Bio::EnsEMBL::SeqRegionSynonym::seq_region_id

(

)

Undocumented method

Code:

summary_as_hash()

public Bio::EnsEMBL::SeqRegionSynonym::summary_as_hash

(

)

Undocumented method

Code:

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The documentation for this class was generated from the following file:

• ensembl/modules/Bio/EnsEMBL/SeqRegionSynonym.pm