ensembl-hive
2.6
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Public Member Functions | |
public Bio::EnsEMBL::StableIdEvent | new () |
public Bio::EnsEMBL::ArchiveStableId | old_ArchiveStableId () |
public Bio::EnsEMBL::ArchiveStableId | new_ArchiveStableId () |
public Float | score () |
public Same | get_attribute () |
public String | ident_string () |
This object represents a stable ID mapping event. Such an event links two ArchiveStableIds with a mapping score.
Definition at line 36 of file StableIdEvent.pm.
public Same Bio::EnsEMBL::StableIdEvent::get_attribute | ( | ) |
Arg[1] : String $type - determines whether to get attribute from 'old' or 'new' ArchiveStableId Arg[2] : String $attr - ArchiveStableId attribute to fetch Example :
Description : Accessor to attributes of the ArchiveStableIds attached to this event. Convenience method that does the check for undef old and/or new ArchiveStableId for you. Return type : same as respective method in Bio::EnsEMBL::ArchiveStableId, or undef Exceptions : thrown on wrong arguments Caller : general Status : At Risk : under development
public String Bio::EnsEMBL::StableIdEvent::ident_string | ( | ) |
Example :
Description : Returns a string that can be used to identify your StableIdEvent. Useful in debug warnings. Return type : String Exceptions : none Caller : general Status : At Risk : under development
public Bio::EnsEMBL::StableIdEvent Bio::EnsEMBL::StableIdEvent::new | ( | ) |
Arg[1] : Bio::EnsEMBL::ArchiveStableId $old_id The old ArchiveStableId in the mapping event Arg[2] : Bio::EnsEMBL::ArchiveStableId $new_id The new ArchiveStableId in the mapping event Arg[3] : (optional) float $score - score of this mapping event Example :
Description : object constructor Return type : Bio::EnsEMBL::StableIdEvent Exceptions : thrown on wrong argument types Caller : Bio::EnsEMBL::DBSQL::ArchiveStableIdAdaptor::fetch_history_tree_by_stable_id, general Status : At Risk : under development
public Bio::EnsEMBL::ArchiveStableId Bio::EnsEMBL::StableIdEvent::new_ArchiveStableId | ( | ) |
Arg[1] : (optional) Bio::EnsEMBL::ArchiveStableId $archive_id, or undef The new ArchiveStableId to set for this mapping event Example :
Description : Getter/setter for new ArchiveStableId in this mapping event. Return type : Bio::EnsEMBL::ArchiveStableId Exceptions : thrown on wrong argument type Caller : general Status : At Risk : under development
public Bio::EnsEMBL::ArchiveStableId Bio::EnsEMBL::StableIdEvent::old_ArchiveStableId | ( | ) |
Arg[1] : (optional) Bio::EnsEMBL::ArchiveStableId $archive_id, or undef The old ArchiveStableId to set for this mapping event Example :
Description : Getter/setter for old ArchiveStableId in this mapping event. Return type : Bio::EnsEMBL::ArchiveStableId Exceptions : thrown on wrong argument type Caller : general Status : At Risk : under development
public Float Bio::EnsEMBL::StableIdEvent::score | ( | ) |
Arg[1] : (optional) float $score - the score to set Example :
Description : Getter/setter for mapping event score. Return type : float or undef Exceptions : none Caller : general Status : At Risk : under development