ensembl-hive
2.6
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Public Member Functions | |
public | score_transcripts () |
public | scores_from_exon_scores () |
public | build_scores () |
public | flag_matrix_from_exon_scores () |
public | score_matrix_from_flag_matrix () |
public | biotype_transcript_rescore () |
public | different_translation_rescore () |
public | non_mapped_gene_rescore () |
public | get_biotype_group () |
Public Member Functions inherited from Bio::EnsEMBL::IdMapping::ScoreBuilder | |
public Bio::EnsEMBL::IdMapping::ScoredMappingMatrix | create_shrinked_matrix () |
public void | internal_id_rescore () |
public void | log_matrix_stats () |
Public Member Functions inherited from Bio::EnsEMBL::IdMapping::BaseObject | |
public $this | new () |
public Filehandle | get_filehandle () |
public Boolean | file_exists () |
public SQLStatement | fetch_value_from_db () |
public Int | dump_table_to_file () |
public Int | upload_file_into_table () |
public Bio::EnsEMBL::Utils::Logger | logger () |
public Bio::EnsEMBL::Utils::ConfParser | conf () |
public Bio::EnsEMBL::IdMapping::Cache | cache () |
Combines ExonScoreBuilder, ExonDirectMapper and ExonerateRunner from Java application.
Definition at line 19 of file TranscriptScoreBuilder.pm.
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::biotype_transcript_rescore | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::build_scores | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::different_translation_rescore | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::flag_matrix_from_exon_scores | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::get_biotype_group | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::non_mapped_gene_rescore | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::score_matrix_from_flag_matrix | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::score_transcripts | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::TranscriptScoreBuilder::scores_from_exon_scores | ( | ) |
Undocumented method