ensembl-hive
2.6
|
Public Member Functions | |
public | score_genes () |
public | scores_from_transcript_scores () |
public | build_scores () |
public | flag_matrix_from_transcript_scores () |
public | score_matrix_from_flag_matrix () |
public | complex_gene_gene_score () |
public | simple_gene_gene_score () |
public | simple_gene_rescore () |
public | biotype_gene_rescore () |
public | location_gene_rescore () |
Public Member Functions inherited from Bio::EnsEMBL::IdMapping::ScoreBuilder | |
public Bio::EnsEMBL::IdMapping::ScoredMappingMatrix | create_shrinked_matrix () |
public void | internal_id_rescore () |
public void | log_matrix_stats () |
Public Member Functions inherited from Bio::EnsEMBL::IdMapping::BaseObject | |
public $this | new () |
public Filehandle | get_filehandle () |
public Boolean | file_exists () |
public SQLStatement | fetch_value_from_db () |
public Int | dump_table_to_file () |
public Int | upload_file_into_table () |
public Bio::EnsEMBL::Utils::Logger | logger () |
public Bio::EnsEMBL::Utils::ConfParser | conf () |
public Bio::EnsEMBL::IdMapping::Cache | cache () |
Combines ExonScoreBuilder, ExonDirectMapper and ExonerateRunner from Java application.
Definition at line 18 of file GeneScoreBuilder.pm.
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::biotype_gene_rescore | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::build_scores | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::complex_gene_gene_score | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::flag_matrix_from_transcript_scores | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::location_gene_rescore | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::score_genes | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::score_matrix_from_flag_matrix | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::scores_from_transcript_scores | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::simple_gene_gene_score | ( | ) |
Undocumented method
public Bio::EnsEMBL::IdMapping::GeneScoreBuilder::simple_gene_rescore | ( | ) |
Undocumented method