3 See the NOTICE file distributed with
this work
for additional information
4 regarding copyright ownership.
6 Licensed under the Apache License, Version 2.0 (the
"License");
7 you may not use
this file except in compliance with the License.
8 You may obtain a copy of the License at
12 Unless required by applicable law or agreed to in writing, software
13 distributed under the License is distributed on an
"AS IS" BASIS,
14 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15 See the License
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16 limitations under the License.
23 Please email comments or questions to the
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26 Questions may also be sent to the Ensembl help desk at
39 This
object deals with the raw data to built the density plots
45 package Bio::EnsEMBL::DensityPlot::BinValue;
47 use vars qw($AUTOLOAD @ISA);
50 # Object preamble - inheriets from Bio::Root::Object
54 # new() is inherited from Bio::Root::Object
56 # _initialize is where the heavy stuff will happen when new is called
59 my ($class,@args) = @_;
66 =head2 chromosomestart
68 Title : ChromosomeStart
69 Usage : $obj->ChromosomeStart($newval)
71 Returns : value of ChromosomeStart
72 Args : newvalue (optional)
81 $obj->{
'chromosomestart'} = $value;
83 return $obj->{
'chromosomestart'};
90 Usage : $obj->chromosomeend($newval)
92 Returns : value of chromosomeend
93 Args : newvalue (optional)
102 $obj->{
'chromosomeend'} = $value;
104 return $obj->{
'chromosomeend'};
112 Usage : $obj->value($newval)
114 Returns : value of value
115 Args : newvalue (optional)
124 $obj->{
'value'} = $value;
126 return $obj->{
'value'};
135 Usage : $obj->scaledvalue($newval)
137 Returns :
this object's scaled value
138 Args : newvalue (optional)
146 my $scaledvalue = shift;
147 $obj->{'scaledvalue
'} = $scaledvalue;
149 return $obj->{'scaledvalue
'};
158 Usage : $obj->url($newval)
160 Returns : this object's url
161 Args : newvalue (optional)
170 $obj->{
'url'} = $url;
172 return $obj->{
'url'};