XrefParser::XenopusJamboreeParser Class Reference

Public Member Functions
public N	run ()
public N	parse_description ()

Detailed Description

Description

A parser class to parse the Xenbase source file.

-species = xenopus_tropicalis
-species_id = 8364
-data_uri = ftp://ftp.xenbase.org/pub/GenePageReports/GenePageEnsemblModelMapping.txt
-file_format = TSV
-columns = [acc label desc stable_id]

Synopsis

my $parser = XrefParser::XenopusJamboreeParser->new($db->dbh);
$parser->run({
  source_id  => 150,
  species_id => 8364,
  files      => ["xenopusjamboree.txt"],
});

Definition at line 27 of file XenopusJamboreeParser.pm.

Member Function Documentation

parse_description()

public N XrefParser::XenopusJamboreeParser::parse_description

(

)

  Description: Extract description information from
               Xenopus downloaded file
  Return type: N/A
  Caller     : internal

Code:

run()

public N XrefParser::XenopusJamboreeParser::run

(

)

  Description: Runs the XenopusJamboreeParser
  Return type: N/A
  Caller     : internal

Code:

---

The documentation for this class was generated from the following file:

• ensembl/misc-scripts/xref_mapping/XrefParser/XenopusJamboreeParser.pm