Bio::EnsEMBL::Utils::Converter::bio_ens Class Reference

Inheritance diagram for Bio::EnsEMBL::Utils::Converter::bio_ens:

Public Member Functions
public	new ()
protected	_initialize ()
protected	_guess_module ()
public L	analysis ()
public	contig ()
public L	dbadaptor ()
public	ensembl_db ()
public	analysis_dbID ()
public	analysis_logic_name ()
public	contig_dbID ()
public	contig_name ()
public L	slice_dbID ()
public	slice_chr_start_end ()
public	translation_id ()
Public Member Functions inherited from Bio::EnsEMBL::Utils::Converter
public L	new ()
protected	_initialize ()
protected	_guess_module ()
public An	convert ()
protected	_convert_single ()
protected	_load_module ()

Detailed Description

Description

Definition at line 12 of file bio_ens.pm.

Member Function Documentation

_guess_module()

protected Bio::EnsEMBL::Utils::Converter::bio_ens::_guess_module

(

)

Undocumented method

Code:

_initialize()

protected Bio::EnsEMBL::Utils::Converter::bio_ens::_initialize

(

)

Undocumented method

Code:

analysis()

public L Bio::EnsEMBL::Utils::Converter::bio_ens::analysis

(

)

  Title   : analysis
  Usage   : $self->analysis
  Function: get and set for analysis
  Return  : Bio::EnsEMBL::Analysis
  Args    : Bio::EnsEMBL::Analysis

Code:

analysis_dbID()

public Bio::EnsEMBL::Utils::Converter::bio_ens::analysis_dbID

(

)

  Title   : analysis_dbID
  Usage   : 
  Function: 
  Return  :
  Args    :

Code:

analysis_logic_name()

public Bio::EnsEMBL::Utils::Converter::bio_ens::analysis_logic_name

(

)

  Title   : analysis_logic_name
  Usage   : 
  Function: 
  Return  :
  Args    :

Code:

contig()

public Bio::EnsEMBL::Utils::Converter::bio_ens::contig

(

)

  Title   : contig
  Usage   : $self->contig
  Function: get and set for contig
  Return  : 
  Args    :

Code:

contig_dbID()

public Bio::EnsEMBL::Utils::Converter::bio_ens::contig_dbID

(

)

  Title   : contig_dbID
  Usage   : $self->contig_dbID
  Function: get and set for contig_dbID
  Return  : 
  Args    :

Code:

contig_name()

public Bio::EnsEMBL::Utils::Converter::bio_ens::contig_name

(

)

  Title   : contig_name
  Usage   : $self->contig_name
  Function: get and set for contig_name
  Return  : 
  Args    :    
 

Code:

dbadaptor()

public L Bio::EnsEMBL::Utils::Converter::bio_ens::dbadaptor

(

)

  Title   : dbadaptor
  Usage   : $self->dbadaptor
  Function: get and set for dbadaptor
  Return  : Bio::EnsEMBL::DBSQL::DBAdaptor
  Args    : Bio::EnsEMBL::DBSQL::DBAdaptor

Code:

ensembl_db()

public Bio::EnsEMBL::Utils::Converter::bio_ens::ensembl_db

(

)

  Title   : ensembl_db
  Usage   : 
  Function: 
  Return  :
  Args    :

Code:

new()

public Bio::EnsEMBL::Utils::Converter::bio_ens::new

(

)

Please see Bio::EnsEMBL::Utils::Converter::new

Code:

slice_chr_start_end()

public Bio::EnsEMBL::Utils::Converter::bio_ens::slice_chr_start_end

(

)

  Title   : slice_chr_start_end
  Usage   : my $slice = $self->slice_chr_start_end($chr, $start, $end);
  Function: get and set for slice_chr_start_end
  Return  : 
  Args    :    
 

Code:

slice_dbID()

public L Bio::EnsEMBL::Utils::Converter::bio_ens::slice_dbID

(

)

  Title   : slice
  Usage   : $self->slice
  Function: get and set for slice
  Return  : Bio::EnsEMBL::Slice
  Args    : Bio::EnsEMBL::Slice   
 

Code:

translation_id()

public Bio::EnsEMBL::Utils::Converter::bio_ens::translation_id

(

)

Undocumented method

Code:

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The documentation for this class was generated from the following file:

• ensembl/modules/Bio/EnsEMBL/Utils/Converter/bio_ens.pm