Bio::EnsEMBL::Mapper::Pair Class Reference

Inheritance diagram for Bio::EnsEMBL::Mapper::Pair:

Public Member Functions
public	new ()
public	to ()
public	from ()
public	ori ()

Detailed Description

Synopsis

Description

Two regions mapped between different coordinate systems are each
represented by a Bio::EnsEMBL::Mapper::Unit and joined together as a
Bio::EnsEMBL::Mapper::Pair.

Definition at line 15 of file Pair.pm.

Member Function Documentation

from()

public Bio::EnsEMBL::Mapper::Pair::from

(

)

  Arg  1      Bio::EnsEMBL::Mapper::Unit $seqobj
          from and to represent the two regions
          which are mapped to each other
  Function    accessor method
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable

Code:

new()

public Bio::EnsEMBL::Mapper::Pair::new

(

)

Undocumented method

Code:

ori()

public Bio::EnsEMBL::Mapper::Pair::ori

(

)

  Arg  1      Bio::EnsEMBL::Mapper::Unit $ori
  Function    accessor method
          relative orientation of the the
          two mapped regions
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable

Code:

to()

public Bio::EnsEMBL::Mapper::Pair::to

(

)

  Arg  1      Bio::EnsEMBL::Mapper::Unit $seqobj
          from and to represent the two regions
          which are mapped to each other
  Function    accessor method
  Returntype  Bio::EnsEMBL::Mapper::Unit
  Exceptions  none
  Caller      Bio::EnsEMBL::Mapper::Pair
  Status     : Stable

Code:

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The documentation for this class was generated from the following file:

• ensembl/modules/Bio/EnsEMBL/Mapper/Pair.pm