ObjectXref.pm

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=head1 LICENSE
 
See the NOTICE file distributed with this work for additional information
regarding copyright ownership.
 
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
 
     http://www.apache.org/licenses/LICENSE-2.0
 
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
 
=cut
 
package Xref::Schema::Result::ObjectXref;
 
=head1 NAME
 
Xref::Schema::Result::ObjectXref
 
=cut
 
use strict;
use warnings;
use utf8;
 
use base 'DBIx::Class::Core';
 
=head1 TABLE: C<object_xref>
 
=cut
 
__PACKAGE__->table("object_xref");
 
=head1 ACCESSORS
 
=head2 object_xref_id
 
  data_type: 'integer'
  extra: {unsigned => 1}
  is_auto_increment: 1
  is_nullable: 0
 
=head2 ensembl_id
 
  data_type: 'integer'
  extra: {unsigned => 1}
  is_nullable: 0
 
=head2 ensembl_object_type
 
  data_type: 'enum'
  extra: {list => ["RawContig","Transcript","Gene","Translation"]}
  is_nullable: 0
 
=head2 xref_id
 
  data_type: 'integer'
  extra: {unsigned => 1}
  is_nullable: 0
 
=head2 linkage_annotation
 
  data_type: 'varchar'
  is_nullable: 1
  size: 255
 
=head2 linkage_type
 
  data_type: 'enum'
  extra: {list => ["PROJECTION","MISC","DEPENDENT","DIRECT","SEQUENCE_MATCH","INFERRED_PAIR","PROBE","UNMAPPED","COORDINATE_OVERLAP","CHECKSUM"]}
  is_nullable: 1
 
=head2 ox_status
 
  data_type: 'enum'
  default_value: 'DUMP_OUT'
  extra: {list => ["DUMP_OUT","FAILED_PRIORITY","FAILED_CUTOFF","NO_DISPLAY","MULTI_DELETE"]}
  is_nullable: 0
 
=head2 unused_priority
 
  data_type: 'integer'
  extra: {unsigned => 1}
  is_nullable: 1
 
=head2 master_xref_id
 
  data_type: 'integer'
  extra: {unsigned => 1}
  is_nullable: 1
 
=cut
 
__PACKAGE__->add_columns(
  "object_xref_id",
  {
    data_type => "integer",
    extra => { unsigned => 1 },
    is_auto_increment => 1,
    is_nullable => 0,
  },
  "ensembl_id",
  { data_type => "integer", extra => { unsigned => 1 }, is_nullable => 0 },
  "ensembl_object_type",
  {
    data_type => "enum",
    extra => { list => ["RawContig", "Transcript", "Gene", "Translation"] },
    is_nullable => 0,
  },
  "xref_id",
  { data_type => "integer", extra => { unsigned => 1 }, is_nullable => 0 },
  "linkage_annotation",
  { data_type => "varchar", is_nullable => 1, size => 255 },
  "linkage_type",
  {
    data_type => "enum",
    extra => {
      list => [
        "PROJECTION",
        "MISC",
        "DEPENDENT",
        "DIRECT",
        "SEQUENCE_MATCH",
        "INFERRED_PAIR",
        "PROBE",
        "UNMAPPED",
        "COORDINATE_OVERLAP",
        "CHECKSUM",
      ],
    },
    is_nullable => 1,
  },
  "ox_status",
  {
    data_type => "enum",
    default_value => "DUMP_OUT",
    extra => {
      list => [
        "DUMP_OUT",
        "FAILED_PRIORITY",
        "FAILED_CUTOFF",
        "NO_DISPLAY",
        "MULTI_DELETE",
      ],
    },
    is_nullable => 0,
  },
  "unused_priority",
  { data_type => "integer", extra => { unsigned => 1 }, is_nullable => 1 },
  "master_xref_id",
  { data_type => "integer", extra => { unsigned => 1 }, is_nullable => 1 },
);
 
=head1 PRIMARY KEY
 
=over 4
 
=item * L</object_xref_id>
 
=back
 
=cut
 
__PACKAGE__->set_primary_key("object_xref_id");
 
=head1 UNIQUE CONSTRAINTS
 
=head2 C<ensembl_object_type>
 
=over 4
 
=item * L</ensembl_object_type>
 
=item * L</ensembl_id>
 
=item * L</xref_id>
 
=item * L</ox_status>
 
=item * L</master_xref_id>
 
=back
 
=cut
 
__PACKAGE__->add_unique_constraint(
  "ensembl_object_type",
  [
    "ensembl_object_type",
    "ensembl_id",
    "xref_id",
    "ox_status",
    "master_xref_id",
  ],
);
 
__PACKAGE__->has_one('source', 'Xref::Schema::Result::Source', 'source_id' );
# Cannot express the gene/transcript/translation relationship here due to non-normalised format
__PACKAGE__->has_one('xref', 'Xref::Schema::Result::Xref', 'xref_id' );
 
1;