3 See the NOTICE file distributed with
this work
for additional information
4 regarding copyright ownership.
6 Licensed under the Apache License, Version 2.0 (the
"License");
7 you may not use
this file except in compliance with the License.
8 You may obtain a copy of the License at
12 Unless required by applicable law or agreed to in writing, software
13 distributed under the License is distributed on an
"AS IS" BASIS,
14 WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15 See the License
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16 limitations under the License.
23 Please email comments or questions to the
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26 Questions may also be sent to the Ensembl help desk at
39 This
object deals with the raw data to built the density plots
45 package Bio::EnsEMBL::DensityPlot::BinValue;
46 use vars qw($AUTOLOAD @ISA);
49 # Object preamble - inheriets from Bio::Root::Object
53 # new() is inherited from Bio::Root::Object
55 # _initialize is where the heavy stuff will happen when new is called
58 my ($class,@args) = @_;
65 =head2 chromosomestart
67 Title : ChromosomeStart
68 Usage : $obj->ChromosomeStart($newval)
70 Returns : value of ChromosomeStart
71 Args : newvalue (optional)
80 $obj->{
'chromosomestart'} = $value;
82 return $obj->{
'chromosomestart'};
89 Usage : $obj->chromosomeend($newval)
91 Returns : value of chromosomeend
92 Args : newvalue (optional)
101 $obj->{
'chromosomeend'} = $value;
103 return $obj->{
'chromosomeend'};
111 Usage : $obj->value($newval)
113 Returns : value of value
114 Args : newvalue (optional)
123 $obj->{
'value'} = $value;
125 return $obj->{
'value'};
134 Usage : $obj->scaledvalue($newval)
136 Returns :
this object's scaled value
137 Args : newvalue (optional)
145 my $scaledvalue = shift;
146 $obj->{'scaledvalue
'} = $scaledvalue;
148 return $obj->{'scaledvalue
'};
157 Usage : $obj->url($newval)
159 Returns : this object's url
160 Args : newvalue (optional)
169 $obj->{
'url'} = $url;
171 return $obj->{
'url'};