ensembl-hive  2.6
import_bed_simple_feature.pl File Reference

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Functions

public get_adaptor ()
 
public run ()
 
public process_file ()
 
protected _store ()
 
public line_to_SimpleFeature ()
 
public get_Slice ()
 
public get_Analysis ()
 
public info ()
 
public usage ()
 

Function Documentation

◆ _store()

protected _store ( )

Undocumented method

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◆ get_adaptor()

public get_adaptor ( )

Undocumented method

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Undocumented method

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Undocumented method

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◆ get_Analysis()

public get_Analysis ( )

Undocumented method

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◆ get_Slice()

public get_Slice ( )

Undocumented method

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◆ info()

public info ( )

Undocumented method

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◆ line_to_SimpleFeature()

public line_to_SimpleFeature ( )

Undocumented method

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◆ process_file()

public process_file ( )

Undocumented method

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◆ run()

public run ( )

◆ usage()

public usage ( )
get_Analysis
public get_Analysis()
Bio::EnsEMBL::Registry::get_adaptor
public Adaptor get_adaptor()
Bio::EnsEMBL::DBSQL::DBAdaptor
Definition: DBAdaptor.pm:40
_store
protected _store()
Bio::EnsEMBL::DBSQL::DBAdaptor::dbc
public Bio::EnsEMBL::DBSQL::DBConnection dbc()
line_to_SimpleFeature
public line_to_SimpleFeature()
Bio::EnsEMBL::Registry
Definition: Registry.pm:113
Bio::EnsEMBL::DBSQL::DBConnection::password
public String password()
Bio::EnsEMBL::Analysis
Definition: PairAlign.pm:3
Bio::EnsEMBL::DBSQL::DBAdaptor::new
public Bio::EnsEMBL::DBSQL::DBAdaptor new()
get_Slice
public get_Slice()
Bio::EnsEMBL::SimpleFeature
Definition: SimpleFeature.pm:31
info
public info()
get_adaptor
public get_adaptor()
process_file
public process_file()
Bio::EnsEMBL::SimpleFeature::new
public Bio::EnsEMBL::Feature new()