Inheritance diagram for Bio::EnsEMBL::SubSlicedFeature:

Public Member Functions
public	new ()

protected	__resolver ()

Public Member Functions inherited from Bio::EnsEMBL::Utils::Proxy
public Bio::EnsEMBL::Utils::Proxy	new ()

protected Any	__proxy ()

public Boolean	isa ()

public Code	can ()

public void	DESTROY ()

public void	AUTOLOAD ()

protected	__resolver ()

Detailed Description

Synopsis

my $truncated_gene = Bio::EnsEMBL::Utils::SubSlicedFeature->new(
    -start => 300, 
    -end => 10000, 
    -feature => $gene);
my $transcripts = $truncated_gene->get_all_Transcripts();
# list of transcripts is limited to those within the coordinates, rather
# than the original feature Slice. 

Description

  Alters the behaviour of a normal Feature object to act within a user-specified 
  sub-slice of of its boundaries. As it stands, this only affects get_all_*
  methods, meaning that seq_region_start() and project() will work on original
  coordinates.

Definition at line 24 of file SubSlicedFeature.pm.

Member Function Documentation

◆ __resolver()

protected Bio::EnsEMBL::SubSlicedFeature::__resolver ( )

Undocumented method

Code:

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◆ new()

public Bio::EnsEMBL::SubSlicedFeature::new ( )