ensembl-hive
2.6
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Public Member Functions | |
public Bio::EnsEMBL::RepeatConsensus | new () |
public String | name () |
public Int | length () |
public String | repeat_class () |
public String | repeat_type () |
public String | desc () |
public String | repeat_consensus () |
public String | seq () |
Public Member Functions inherited from Bio::EnsEMBL::Storable | |
public Bio::EnsEMBL::Storable | new () |
public Instance | new_fast () |
public Int | dbID () |
public Bio::EnsEMBL::DBSQL::BaseAdaptor | adaptor () |
public Boolean | is_stored () |
public | get_all_DAS_Features () |
Definition at line 5 of file RepeatConsensus.pm.
public String Bio::EnsEMBL::RepeatConsensus::desc | ( | ) |
Arg [1] : none Example :
Description: Getter for the description of this repeat consensus as extracted from the repeat_class. This method is probably useless. Returntype : string Exceptions : none Caller : general Status : Medium risk
public Int Bio::EnsEMBL::RepeatConsensus::length | ( | ) |
Arg [1] : int $length (optional) Example :
Description: Getter/Setter for the length of this repeat_consensus Returntype : int Exceptions : none Caller : general Status : Stable
public String Bio::EnsEMBL::RepeatConsensus::name | ( | ) |
Arg [1] : string $name (optional) Example :
Description: Getter/Setter for the name of this repeat_consensus Returntype : string Exceptions : none Caller : general Status : Stable
public Bio::EnsEMBL::RepeatConsensus Bio::EnsEMBL::RepeatConsensus::new | ( | ) |
Arg [NAME] : string (optional) The name of this repeat consensus Arg [LENGTH]: int (optional) The length of the repeat consensus sequence Arg [REPEAT_CLASS]: string (optional) The type of repeat consensus Arg [REPEAT_CONSENSUS]: string (optional) The sequence of this repeat consensus Arg [REPEAT_TYPE]: string Its like class only more general Arg [...]: Named arguments to superclass constructor (see Bio::EnsEMBL::Storable) Example :
Description: Creates a new Bio::EnsEMBL::RepeatConsensus object Returntype : Bio::EnsEMBL::RepeatConsensus Exceptions : none Caller : RepeatFeatureAdaptors Status : Stable
public String Bio::EnsEMBL::RepeatConsensus::repeat_class | ( | ) |
Arg [1] : string $class (optional) The class of Example :
Description: Getter/Setter for the class of this repeat_consensus Returntype : string Exceptions : none Caller : general Status : Stable
public String Bio::EnsEMBL::RepeatConsensus::repeat_consensus | ( | ) |
Arg [1] : string $consensus_seq (optional) The sequence of this repeat consensus Example :
Description: Getter/Setter for the sequence of this repeat_consensus. Returntype : string Exceptions : none Caller : general
public String Bio::EnsEMBL::RepeatConsensus::repeat_type | ( | ) |
Arg [1] : string $type (optional) The type of the consensus Example :
Description: Getter/Setter for the type of this repeat_consensus Returntype : string Exceptions : none Caller : general
public String Bio::EnsEMBL::RepeatConsensus::seq | ( | ) |
Arg [1] : none Example :
Description: Returns the repeat consensus. This method is useless - Use repeat_consensus() instead. Returntype : string Exceptions : none Caller : general Status : Stable