ensembl-hive
2.6
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Public Member Functions | |
public Bio::EnsEMBL::MicroRNA | new () |
public Int | arm () |
public Hashref | summary_as_hash () |
protected void | _validate_arm_value () |
Public Member Functions inherited from Bio::EnsEMBL::RNAProduct | |
public Bio::EnsEMBL::RNAProduct | new () |
public void | add_Attributes () |
public void | add_DBEntry () |
public Int | cdna_end () |
public Int | cdna_start () |
public String | created_date () |
public String | display_id () |
public Int | end () |
public Bio::EnsEMBL::Exon | end_Exon () |
public Int | genomic_end () |
public Int | genomic_start () |
public Listref | get_all_Attributes () |
public Listref | get_all_DBEntries () |
public Listref | get_all_DBLinks () |
public Listref | get_all_object_xrefs () |
public Listref | get_all_xrefs () |
public String | modified_date () |
public Int | length () |
public void | load () |
public String | seq () |
public String | stable_id () |
public String | stable_id_version () |
public Int | start () |
public Bio::EnsEMBL::Exon | start_Exon () |
public Hashref | summary_as_hash () |
public void | synchronise_attributes () |
public Bio::EnsEMBL::Transcript | transcript () |
public String | type_code () |
public String | version () |
Public Member Functions inherited from Bio::EnsEMBL::Storable | |
public Bio::EnsEMBL::Storable | new () |
public Instance | new_fast () |
public Int | dbID () |
public Bio::EnsEMBL::DBSQL::BaseAdaptor | adaptor () |
public Boolean | is_stored () |
public | get_all_DAS_Features () |
A specialisation of Bio::EnsEMBL::RNAProduct describing MicroRNAs. Mostly takes care of wrapping miRNA-specific RNAProduct attributes in methods which make them look like ordinary class members.
Definition at line 32 of file MicroRNA.pm.
protected void Bio::EnsEMBL::MicroRNA::_validate_arm_value | ( | ) |
Arg [1] : int $arm which arm of the hairpin precursor this miRNA comes from Description: PRIVATE validates if its argument has one of the accepted values for specifying the miRNA hairpin arm. Returntype : none Exceptions : throw if the argument is out of bounds Caller : internal Status : Stable
public Int Bio::EnsEMBL::MicroRNA::arm | ( | ) |
Arg [1] : (optional) int $arm which arm of the hairpin precursor this miRNA comes from Example :
Description : Sets or returns the arm of the hairpin this miRNA comes from. Accepted values are 3 and 5 for 3' and 5', respectively. Return type : Integer Exceptions : throw if setter is passed an incorrect value or if multiple 'mirna_arm' attributes exist. Caller : General Status : Stable
public Bio::EnsEMBL::MicroRNA Bio::EnsEMBL::MicroRNA::new | ( | ) |
Arg: [-ARM] : which arm of the hairpin precursor this miRNA comes from. Returns 3 and 5 for 3' and 5', respectively. Arg [...] : Named arguments to superclass constructor (see Bio::EnsEMBL::RNAProduct) Example :
Description: Constructor. Creates a new MicroRNA object Returntype : Bio::EnsEMBL::MicroRNA Exceptions : throw if ARM value is out of bounds Caller : general Status : In Development
public Hashref Bio::EnsEMBL::MicroRNA::summary_as_hash | ( | ) |
Example :
Description : Retrieves a textual summary of this MicroRNA. Built on top of generic implementation in RNAProduct. Returns : hashref of arrays of descriptive strings Status : Intended for internal use