ensembl-hive
2.5
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Public Member Functions | |
public | new () |
public | cluster_2_nodes () |
public | cluster_2_attributes () |
public | nested_bgcolour () |
public | dot_input_filename () |
public | display_subgraph () |
public | top_level_cluster_names () |
protected | _as_debug () |
public | add_node () |
public | protect_string_for_display () |
An extension of GraphViz that employs a collection of hacks to use some functionality of dot that is not available through GraphViz. There are at least 3 areas where we need it: (1) passing in some parameters of the drawing (such as pad => ...) (2) drawing clusters (boxes) around semaphore fans (3) using the newest node types (such as Mrecord, tab and egg) with HTML-like labels
Definition at line 16 of file GraphViz.pm.
protected Bio::EnsEMBL::Hive::Utils::GraphViz::_as_debug | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::add_node | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::cluster_2_attributes | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::cluster_2_nodes | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::display_subgraph | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::dot_input_filename | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::nested_bgcolour | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::new | ( | ) |
Title : new (constructor) Function: Instantiates a new Utils::GraphViz object by injecting some variables unsupported by GraphViz (but understood by dot) directly into the dot output. We rely on a particular quoting pattern used in dot's input format to fool GraphViz (which luckily doesn't escape quotes).
public Bio::EnsEMBL::Hive::Utils::GraphViz::protect_string_for_display | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::Utils::GraphViz::top_level_cluster_names | ( | ) |
Undocumented method