Bio::EnsEMBL::Hive::DBSQL::BeekeeperAdaptor Class Reference

Inheritance diagram for Bio::EnsEMBL::Hive::DBSQL::BeekeeperAdaptor:

Public Member Functions
public	default_table_name ()
public	object_class ()
public Arrayref	find_live_beekeepers_in_my_meadow ()
public void	bury_other_beekeepers ()
public void	reload_beekeeper_is_blocked ()
Public Member Functions inherited from Bio::EnsEMBL::Hive::DBSQL::ObjectAdaptor
public	object_class ()
public	slicer ()
public	objectify ()
public	mark_stored ()
public	keys_to_columns ()
public The	refresh ()
Public Member Functions inherited from Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor
public	default_table_name ()
public	default_insertion_method ()
public	default_overflow_limit ()
public	default_input_column_mapping ()
public	do_not_update_columns ()
public	new ()
public	db ()
public	dbc ()
public	prepare ()
public	overflow_limit ()
public	input_column_mapping ()
public	table_name ()
public	insertion_method ()
public	column_set ()
public	primary_key ()
public	updatable_column_list ()
public	autoinc_id ()
protected	_table_info_loader ()
public	count_all ()
public	fetch_all ()
public	primary_key_constraint ()
public	fetch_by_dbID ()
public	remove_all ()
public	remove ()
public	update ()
public	store_or_update_one ()
public	check_object_present_in_db_by_content ()
public	class_specific_execute ()
public	store ()
protected	_multi_column_filter ()
public	DESTROY ()
public	AUTOLOAD ()

Detailed Description

Description

    This is the adaptor for Bio::EnsEMBL::Hive::Beekeeper

    It contains all the beekeeper-management methods that are
    called by beekeeper.pl and requir the database.

Definition at line 13 of file BeekeeperAdaptor.pm.

Member Function Documentation

bury_other_beekeepers()

public void Bio::EnsEMBL::Hive::DBSQL::BeekeeperAdaptor::bury_other_beekeepers

(

)

  Arg[1]      : Bio::EnsEMBL::Hive::Beekeeper $ref_beekeeper
  Example     :

$bk_adaptor->bury_other_beekeepers($ref_beekeeper);

  Description : Calls find_live_beekeepers_in_my_meadow() and buries the beekeepers that
                are not running any more (not find with `ps`)
  Returntype  : none
  Exceptions  : none
  Caller      : general
  Status      : Stable

Code:

default_table_name()

public Bio::EnsEMBL::Hive::DBSQL::BeekeeperAdaptor::default_table_name

(

)

Undocumented method

Code:

find_live_beekeepers_in_my_meadow()

public Arrayref Bio::EnsEMBL::Hive::DBSQL::BeekeeperAdaptor::find_live_beekeepers_in_my_meadow

(

)

  Arg[1]      : Bio::EnsEMBL::Hive::Beekeeper $ref_beekeeper
  Example     :

my $live_beekeepers_in_my_meadow = $bk_adaptor->find_live_beekeepers_in_my_meadow($beekeeper);

  Description : Returns all the beekeepers registered on the same host as $ref_beekeeper that are still alive.
  Returntype  : Arrayref of Bio::EnsEMBL::Hive::Beekeeper
  Exceptions  : none
  Caller      : general
  Status      : Stable

Code:

object_class()

public Bio::EnsEMBL::Hive::DBSQL::BeekeeperAdaptor::object_class

(

)

Undocumented method

Code:

reload_beekeeper_is_blocked()

public void Bio::EnsEMBL::Hive::DBSQL::BeekeeperAdaptor::reload_beekeeper_is_blocked

(

)

  Arg[1]      : Bio::EnsEMBL::Hive::Beekeeper $beekeeper
  Example     :

my $is_blocked = $bk_adaptor->reload_beekeeper_is_blocked($beekeeper);

  Description : Updates the object with the freshest value of is_blocked coming from the database
                for this beekeeper, and return the new value.
  Returntype  : none
  Exceptions  : none
  Caller      : general
  Status      : Stable

Code:

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The documentation for this class was generated from the following file:

• modules/Bio/EnsEMBL/Hive/DBSQL/BeekeeperAdaptor.pm