XrefMapper::db Class Reference

Public Member Functions
public	new ()
public	species ()
public	dbc ()
public	dba ()
public String	dir ()
public String	protein_file ()
public String	dna_file ()
public	process_dir ()

Detailed Description

Definition at line 5 of file db.pm.

Member Function Documentation

dba()

public XrefMapper::db::dba

(

)

Undocumented method

Code:

dbc()

public XrefMapper::db::dbc

(

)

Undocumented method

Code:

dir()

public String XrefMapper::db::dir

(

)

                                                                                
  Arg [1]    : (optional) string $arg
               The new value of the dir used 
  Example    :

@co
de $dir = $db->dir()

  Description: Getter/Setter for the directory used in the creation of fasta file
  Returntype : string
  Exceptions : none
  Caller     : new

Code:

dna_file()

public String XrefMapper::db::dna_file

(

)

 
  Arg [1]    : (optional) string $arg
               the fasta file name for the ensembl dna 
  Example    :

$file_name = $self->ensembl_dna_file();

  Description: Getter / Setter for the protien ensembl fasta file 
  Returntype : string
  Exceptions : none

Code:

new()

public XrefMapper::db::new

(

)

Undocumented method

Code:

process_dir()

public XrefMapper::db::process_dir

(

)

Undocumented method

Code:

protein_file()

public String XrefMapper::db::protein_file

(

)

 
  Arg [1]    : (optional) string $arg
               the fasta file name for the ensembl proteins 
  Example    :

$file_name = $self->ensembl_protein_file();

  Description: Getter / Setter for the protien ensembl fasta file 
  Returntype : string
  Exceptions : none

Code:

species()

public XrefMapper::db::species

(

)

Undocumented method

Code:

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The documentation for this class was generated from the following file:

• ensembl/misc-scripts/xref_mapping/XrefMapper/db.pm