Bio::EnsEMBL::DBSQL::OntologyDBAdaptor Class Reference

Inheritance diagram for Bio::EnsEMBL::DBSQL::OntologyDBAdaptor:

Public Member Functions
public	get_available_adaptors ()
Public Member Functions inherited from Bio::EnsEMBL::DBSQL::DBAdaptor
public Bio::EnsEMBL::DBSQL::DBAdaptor	new ()
public void	clear_caches ()
public void	find_and_add_aliases ()
public void	find_and_add_species_id ()
public Bio::EnsEMBL::DBSQL::DBConnection	dbc ()
public void	add_db_adaptor ()
public void	remove_db_adaptor ()
public Hash	get_all_db_adaptors ()
public Bio::EnsEMBL::DBSQL::DBConnection	get_db_adaptor ()
public Reference	get_available_adaptors ()
public void	add_DASFeatureFactory ()
public	remove_all_DASFeatureFactories ()
protected Bio::EnsEMBL::ExternalFeatureFactory	_each_DASFeatureFactory ()
public void	add_ExternalFeatureAdaptor ()
public Reference	get_ExternalFeatureAdaptors ()
public void	add_ExternalFeatureFactory ()
public Adaptor	get_adaptor ()
public void	set_adaptor ()
public Reference	get_GenericFeatureAdaptors ()
public void	add_GenericFeatureAdaptor ()
public String	species ()
public Array	all_species ()
public Boolean	is_multispecies ()
public String	species_id ()
public Int	no_cache ()
public String	group ()
public Bio::EnsEMBL::Utils::SeqRegionCache	get_SeqRegionCache ()
protected	_get_schema_build ()
public Dna	dnadb ()
public	AUTOLOAD ()
public	DESTROY ()
public Hash	to_hash ()
public void	switch_adaptor ()
public Boolean	has_switched_adaptor ()
public The	revert_adaptor ()

Detailed Description

Description

Database adaptor for the ontology database ensembl_ontology_NN.
Mostly inheriting from Bio::EnsEMBL::DBSQL::DBAdaptor, overriding its
get_available_adaptors() method.  Not doing very much else at this
moment.

Definition at line 12 of file OntologyDBAdaptor.pm.

Member Function Documentation

get_available_adaptors()

public Bio::EnsEMBL::DBSQL::OntologyDBAdaptor::get_available_adaptors

(

)

Undocumented method

Code:

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The documentation for this class was generated from the following file:

• ensembl/modules/Bio/EnsEMBL/DBSQL/OntologyDBAdaptor.pm