NakedTableAdaptor.pm

Go to the documentation of this file.

=pod
 
=head1 NAME
 
    Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor
 
=head1 SYNOPSIS
 
    my $intermediate_result_nt_adaptor  = $dba->get_NakedTableAdaptor( 'table_name' => 'intermediate_result' );
    my $final_result_nt_adaptor         = $final_result_nt->adaptor;
 
=head1 DESCRIPTION
 
    This module together with its data container are used to enable dataflow into arbitrary tables (rather than just 'job' table).
    Due to the implementation of EnsEMBL Registry code, NakedTable objects know *where* to dataflow, and NakedTableAdaptor knows *how* to dataflow.
 
=head1 LICENSE
 
    See the NOTICE file distributed with this work for additional information
    regarding copyright ownership.
 
    Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License.
    You may obtain a copy of the License at
 
         http://www.apache.org/licenses/LICENSE-2.0
 
    Unless required by applicable law or agreed to in writing, software distributed under the License
    is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
    See the License for the specific language governing permissions and limitations under the License.
 
=head1 CONTACT
 
    Please subscribe to the Hive mailing list:  http://listserver.ebi.ac.uk/mailman/listinfo/ehive-users  to discuss Hive-related questions or to be notified of our updates
 
=cut
 
 
package Bio::EnsEMBL::Hive::DBSQL::NakedTableAdaptor;
 
use strict;
use warnings;
 
use base ('Bio::EnsEMBL::Hive::DBSQL::BaseAdaptor');
 
 
sub slicer {    # take a slice of the hashref (if only we could inline in Perl!)
    my ($self, $hashref, $fields) = @_;
 
    return [ @$hashref{@$fields} ];
}
 
 
sub objectify {    # pretend the hashref becomes an object (if only we could inline in Perl!)
    return pop @_;
}
 
 
sub mark_stored {
    my ($self, $hashref, $dbID) = @_;
 
    if(my $autoinc_id = $self->autoinc_id()) {
        $hashref->{$autoinc_id} = $dbID;
    }
}
 
 
sub keys_to_columns {
    my ($self, $hashref) = @_;
 
    my $sorted_keys = [ sort keys %$hashref ];
 
    return ( $sorted_keys, join(', ', @$sorted_keys) );
}
 
1;