IndelPair.pm

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=head1 LICENSE
 
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=cut
 
 
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=cut
 
=head1 NAME
 
Bio::EnsEMBL::Mapper::IndelPair
 
=head1 SYNOPSIS
 
=head1 DESCRIPTION
 
Two regions mapped between different coordinate systems are each
represented by a Bio::EnsEMBL::Mapper::Unit and joined together as a
Bio::EnsEMBL::Mapper::Pair, when one of the regions is an indel.
 
=head1 METHODS
 
=cut
 
package Bio::EnsEMBL::Mapper::IndelPair;
 
use vars qw(@ISA);
use strict;
 
@ISA = qw(Bio::EnsEMBL::Mapper::Pair);
 
sub new {
  my ($proto, @args) = @_;
 
  my $class = ref($proto) || $proto;
 
  my $self = $class->SUPER::new(@args);    # create the Pair object
  $self->{'indel'} = 1;                    # and add the Indel flag
 
  return $self;
}
 
1;