ensembl-hive
2.6
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An AnalysisJob is the link between the input_id control data, the analysis and the rule system. It also tracks the state of the job as it is processed
Definition at line 13 of file AnalysisJob.pm.
public Bio::EnsEMBL::Hive::AnalysisJob::accu_hash | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::accu_id_stack | ( | ) |
Undocumented method
public Boolean Bio::EnsEMBL::Hive::AnalysisJob::autoflow | ( | ) |
Title : autoflow Function: Gets/sets flag for whether the job should be automatically dataflowed on branch 1 when the job completes. If the subclass manually sends a job along branch 1 with dataflow_output_id, the autoflow will turn itself off. Returns : boolean (1=default|0)
public Bio::EnsEMBL::Hive::AnalysisJob::dataflow_output_id | ( | ) |
Title : dataflow_output_id Arg[1](req) : <string> $output_id Arg[2](opt) : <int> $branch_name_or_code (optional, defaults to 1) Usage : $self->dataflow_output_id($output_id, $branch_name_or_code); Function: If a RunnableDB(Process) needs to create jobs, this allows it to have jobs created and flowed through the dataflow rules of the workflow graph. This 'output_id' becomes the 'input_id' of the newly created job at the ends of the dataflow pipes. The optional 'branch_name_or_code' determines which dataflow pipe(s) to flow the job through.
public Bio::EnsEMBL::Hive::AnalysisJob::died_somewhere | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::fan_cache | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::fetch_local_blocking_semaphore | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::flattened_stack_and_accu | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::incomplete | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::input_id | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::lethal_for_worker | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::load_parameters | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::load_stack_and_accu | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::param_id_stack | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::query_count | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::retry_count | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::role_id | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::runtime_msec | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::set_and_update_status | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::status | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::stderr_file | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::stdout_file | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::toString | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::transient_error | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::url_query_params | ( | ) |
Undocumented method
public Bio::EnsEMBL::Hive::AnalysisJob::when_completed | ( | ) |
Undocumented method