Bio::EnsEMBL::BaseAlignFeature Member List

This is the complete list of members for Bio::EnsEMBL::BaseAlignFeature, including all inherited members.

_ensembl_cigar_alignment_length()	Bio::EnsEMBL::BaseAlignFeature
_ensembl_reverse_complement()	Bio::EnsEMBL::BaseAlignFeature
_get_mdz_alignment_length()	Bio::EnsEMBL::BaseAlignFeature
_get_mdz_chunk_type()	Bio::EnsEMBL::BaseAlignFeature
_get_mdz_chunks()	Bio::EnsEMBL::BaseAlignFeature
_hit_unit()	Bio::EnsEMBL::BaseAlignFeature
_mdtag_alignment_length()	Bio::EnsEMBL::BaseAlignFeature
_mdz_alignment_string()	Bio::EnsEMBL::BaseAlignFeature
_parse_cigar()	Bio::EnsEMBL::BaseAlignFeature
_parse_ensembl_cigar()	Bio::EnsEMBL::BaseAlignFeature
_parse_ensembl_features()	Bio::EnsEMBL::BaseAlignFeature
_parse_features()	Bio::EnsEMBL::BaseAlignFeature
_query_unit()	Bio::EnsEMBL::BaseAlignFeature
adaptor()	Bio::EnsEMBL::Storable
add_sub_SeqFeature()	Bio::EnsEMBL::Feature
align_type()	Bio::EnsEMBL::BaseAlignFeature
alignment_length()	Bio::EnsEMBL::BaseAlignFeature
analysis()	Bio::EnsEMBL::Feature
cigar_string()	Bio::EnsEMBL::BaseAlignFeature
coord_system_name()	Bio::EnsEMBL::Feature
coverage()	Bio::EnsEMBL::FeaturePair
db_display_name()	Bio::EnsEMBL::FeaturePair
db_name()	Bio::EnsEMBL::FeaturePair
dbID()	Bio::EnsEMBL::Storable
display_id()	Bio::EnsEMBL::FeaturePair
end()	Bio::EnsEMBL::Feature
equals()	Bio::EnsEMBL::Feature
external_db_id()	Bio::EnsEMBL::FeaturePair
extra_data()	Bio::EnsEMBL::FeaturePair
feature_Slice()	Bio::EnsEMBL::Feature
feature_so_acc()	Bio::EnsEMBL::Feature
feature_so_term()	Bio::EnsEMBL::Feature
flush_sub_SeqFeature()	Bio::EnsEMBL::Feature
get_all_alt_locations()	Bio::EnsEMBL::Feature
get_all_DAS_Features()	Bio::EnsEMBL::Storable
get_nearest_Gene()	Bio::EnsEMBL::Feature
get_overlapping_Genes()	Bio::EnsEMBL::Feature
group_id()	Bio::EnsEMBL::FeaturePair
hcoverage()	Bio::EnsEMBL::FeaturePair
hdescription()	Bio::EnsEMBL::FeaturePair
hend()	Bio::EnsEMBL::FeaturePair
hseq_region_end()	Bio::EnsEMBL::FeaturePair
hseq_region_name()	Bio::EnsEMBL::FeaturePair
hseq_region_start()	Bio::EnsEMBL::FeaturePair
hseq_region_strand()	Bio::EnsEMBL::FeaturePair
hseqname()	Bio::EnsEMBL::FeaturePair
hslice()	Bio::EnsEMBL::FeaturePair
hspecies()	Bio::EnsEMBL::FeaturePair
hstart()	Bio::EnsEMBL::FeaturePair
hstrand()	Bio::EnsEMBL::FeaturePair
identical_matches()	Bio::EnsEMBL::FeaturePair
invert()	Bio::EnsEMBL::FeaturePair
is_stored()	Bio::EnsEMBL::Storable
length()	Bio::EnsEMBL::Feature
level_id()	Bio::EnsEMBL::FeaturePair
move()	Bio::EnsEMBL::Feature
new()	Bio::EnsEMBL::BaseAlignFeature
new_fast()	Bio::EnsEMBL::Storable
overlaps()	Bio::EnsEMBL::Feature
overlaps_local()	Bio::EnsEMBL::Feature
p_value()	Bio::EnsEMBL::FeaturePair
percent_id()	Bio::EnsEMBL::FeaturePair
positive_matches()	Bio::EnsEMBL::FeaturePair
project()	Bio::EnsEMBL::Feature
project_to_slice()	Bio::EnsEMBL::Feature
reverse_complement()	Bio::EnsEMBL::BaseAlignFeature
score()	Bio::EnsEMBL::FeaturePair
seq()	Bio::EnsEMBL::Feature
seq_region_end()	Bio::EnsEMBL::Feature
seq_region_length()	Bio::EnsEMBL::Feature
seq_region_name()	Bio::EnsEMBL::Feature
seq_region_start()	Bio::EnsEMBL::Feature
seq_region_strand()	Bio::EnsEMBL::Feature
seqname()	Bio::EnsEMBL::Feature
slice()	Bio::EnsEMBL::Feature
species()	Bio::EnsEMBL::FeaturePair
start()	Bio::EnsEMBL::Feature
strand()	Bio::EnsEMBL::Feature
strands_reversed()	Bio::EnsEMBL::BaseAlignFeature
sub_SeqFeature()	Bio::EnsEMBL::Feature
summary_as_hash()	Bio::EnsEMBL::Feature
transfer()	Bio::EnsEMBL::Feature
transform()	Bio::EnsEMBL::BaseAlignFeature
type()	Bio::EnsEMBL::FeaturePair
ungapped_features()	Bio::EnsEMBL::BaseAlignFeature
version()	Bio::EnsEMBL::Feature