AAA_conf.pm

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=head1 LICENSE
 
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Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
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     http://www.apache.org/licenses/LICENSE-2.0
 
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=cut
 
package Bio::EnsEMBL::Hive::Examples::QPT::PipeConfig::AAA_conf;
 
use strict;
use warnings;
 
use base ('Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf');  # All Hive databases configuration files should inherit from HiveGeneric, directly or indirectly
use Bio::EnsEMBL::Hive::PipeConfig::HiveGeneric_conf;           # Allow this particular config to use conditional dataflow and INPUT_PLUS
 
 
 
sub pipeline_create_commands {
    my ($self) = @_;
    return [
        @{$self->SUPER::pipeline_create_commands},  # inheriting database and hive tables' creation
 
            # additional tables needed for long multiplication pipeline's operation:
        $self->db_cmd('CREATE TABLE final_result (a_multiplier varchar(40) NOT NULL, b_multiplier varchar(40) NOT NULL, result varchar(80) NOT NULL, PRIMARY KEY (a_multiplier, b_multiplier))'),
    ];
}
 
 
sub pipeline_analyses {
    my ($self) = @_;
    return [
 
        {   -logic_name => 'call_BBB',
            -module     => 'Bio::EnsEMBL::Hive::RunnableDB::Dummy',
            -input_ids => [
                { 'a_multiplier' => '9650156169', 'b_multiplier' => '327358788' },
                { 'a_multiplier' => '327358788', 'b_multiplier' => '9650156169' },
            ],
            -flow_into => {
                '1->A'  => $self->o('BBB_url').'?logic_name=call_CCC_or_DDD',
                'A->1'  => 'AAA_funnel',
            },
        },
 
        {   -logic_name => 'AAA_funnel',
            -module     => 'Bio::EnsEMBL::Hive::RunnableDB::Dummy',
            -flow_into => {
                2 => '?table_name=final_result',
            },
        },
    ];
}
 
1;