Bio::EnsEMBL::Utils::VegaCuration::Transcript Member List

This is the complete list of members for Bio::EnsEMBL::Utils::VegaCuration::Transcript, including all inherited members.

_by_chr_num()	Bio::EnsEMBL::Utils::ConversionSupport
_get_attrib_id()	Bio::EnsEMBL::Utils::ConversionSupport
allowed_duplicate_regions()	Bio::EnsEMBL::Utils::ConversionSupport
allowed_params()	Bio::EnsEMBL::Utils::ConversionSupport
check_names_and_overlap()	Bio::EnsEMBL::Utils::VegaCuration::Transcript
check_remarks_and_update_names()	Bio::EnsEMBL::Utils::VegaCuration::Transcript
check_required_params()	Bio::EnsEMBL::Utils::ConversionSupport
comma_to_list()	Bio::EnsEMBL::Utils::ConversionSupport
commify()	Bio::EnsEMBL::Utils::ConversionSupport
confirm_params()	Bio::EnsEMBL::Utils::ConversionSupport
create_commandline_options()	Bio::EnsEMBL::Utils::ConversionSupport
date()	Bio::EnsEMBL::Utils::ConversionSupport
date_and_mem()	Bio::EnsEMBL::Utils::ConversionSupport
date_and_time()	Bio::EnsEMBL::Utils::ConversionSupport
date_format()	Bio::EnsEMBL::Utils::ConversionSupport
dba()	Bio::EnsEMBL::Utils::ConversionSupport
dynamic_use()	Bio::EnsEMBL::Utils::ConversionSupport
error()	Bio::EnsEMBL::Utils::ConversionSupport
fetch_non_hidden_slices()	Bio::EnsEMBL::Utils::ConversionSupport
filehandle()	Bio::EnsEMBL::Utils::ConversionSupport
find_gaps()	Bio::EnsEMBL::Utils::VegaCuration::Gene
find_non_overlaps()	Bio::EnsEMBL::Utils::VegaCuration::Transcript
finish_log()	Bio::EnsEMBL::Utils::ConversionSupport
fix_attrib_value()	Bio::EnsEMBL::Utils::ConversionSupport
get_alignment()	Bio::EnsEMBL::Utils::ConversionSupport
get_annotrack_params()	Bio::EnsEMBL::Utils::ConversionSupport
get_attrib_values()	Bio::EnsEMBL::Utils::ConversionSupport
get_chrlength()	Bio::EnsEMBL::Utils::ConversionSupport
get_common_params()	Bio::EnsEMBL::Utils::ConversionSupport
get_database()	Bio::EnsEMBL::Utils::ConversionSupport
get_dbconnection()	Bio::EnsEMBL::Utils::ConversionSupport
get_ensembl_chr_mapping()	Bio::EnsEMBL::Utils::ConversionSupport
get_havana_fragmented_loci_comments()	Bio::EnsEMBL::Utils::VegaCuration::Transcript
get_loutre_params()	Bio::EnsEMBL::Utils::ConversionSupport
get_non_hidden_slice_names()	Bio::EnsEMBL::Utils::ConversionSupport
get_species_scientific_name()	Bio::EnsEMBL::Utils::ConversionSupport
get_taxonomy_id()	Bio::EnsEMBL::Utils::ConversionSupport
get_unique_genes()	Bio::EnsEMBL::Utils::ConversionSupport
get_wanted_chromosomes()	Bio::EnsEMBL::Utils::ConversionSupport
init_log()	Bio::EnsEMBL::Utils::ConversionSupport
init_log_date()	Bio::EnsEMBL::Utils::ConversionSupport
is_haplotype()	Bio::EnsEMBL::Utils::ConversionSupport
is_patch()	Bio::EnsEMBL::Utils::ConversionSupport
list_all_params()	Bio::EnsEMBL::Utils::ConversionSupport
list_or_file()	Bio::EnsEMBL::Utils::ConversionSupport
lock_log()	Bio::EnsEMBL::Utils::ConversionSupport
log()	Bio::EnsEMBL::Utils::ConversionSupport
log_error()	Bio::EnsEMBL::Utils::ConversionSupport
log_filehandle()	Bio::EnsEMBL::Utils::ConversionSupport
log_stamped()	Bio::EnsEMBL::Utils::ConversionSupport
log_verbose()	Bio::EnsEMBL::Utils::ConversionSupport
log_warning()	Bio::EnsEMBL::Utils::ConversionSupport
mem()	Bio::EnsEMBL::Utils::ConversionSupport
new()	Bio::EnsEMBL::Utils::ConversionSupport
param()	Bio::EnsEMBL::Utils::ConversionSupport
parse_common_options()	Bio::EnsEMBL::Utils::ConversionSupport
parse_extra_options()	Bio::EnsEMBL::Utils::ConversionSupport
read_user_input()	Bio::EnsEMBL::Utils::ConversionSupport
remove_duplicate_attribs()	Bio::EnsEMBL::Utils::ConversionSupport
remove_vega_params()	Bio::EnsEMBL::Utils::ConversionSupport
save_seq()	Bio::EnsEMBL::Utils::ConversionSupport
serverroot()	Bio::EnsEMBL::Utils::ConversionSupport
sort_chromosomes()	Bio::EnsEMBL::Utils::ConversionSupport
species()	Bio::EnsEMBL::Utils::ConversionSupport
split_chromosomes_by_size()	Bio::EnsEMBL::Utils::ConversionSupport
store_new_attribute()	Bio::EnsEMBL::Utils::ConversionSupport
unlock_log()	Bio::EnsEMBL::Utils::ConversionSupport
update_attribute()	Bio::EnsEMBL::Utils::ConversionSupport
user_proceed()	Bio::EnsEMBL::Utils::ConversionSupport
warnings()	Bio::EnsEMBL::Utils::ConversionSupport