PeekJob.pm

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#!/usr/bin/env perl
 
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# regarding copyright ownership.
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# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
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#      http://www.apache.org/licenses/LICENSE-2.0
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package Bio::EnsEMBL::Hive::Scripts::PeekJob;
 
use strict;
use warnings;
use Data::Dumper;
 
sub peek {
    my ($pipeline, $job_id) = @_;
 
    my $hive_dba = $pipeline->hive_dba;
    die "Hive's DBAdaptor is not a defined Bio::EnsEMBL::Hive::DBSQL::DBAdaptor\n" unless $hive_dba and $hive_dba->isa('Bio::EnsEMBL::Hive::DBSQL::DBAdaptor');
 
    # fetch job and populate params
    my $job_adaptor = $hive_dba->get_AnalysisJobAdaptor;
    my $job = $job_adaptor->fetch_by_dbID( $job_id );
    die "Cannot find job with id $job_id\n" unless $job;
    $job->load_parameters;
    my $analysis_id = $job->analysis_id;
    my $logic_name  = $job->analysis->logic_name;
 
    my $label = "[ Analysis $logic_name ($analysis_id) Job $job_id ]";
    return _stringify_params($job->{'_unsubstituted_param_hash'}, $label);
}
 
sub _stringify_params {
    my ($params, $label) = @_;
    
    local $Data::Dumper::Sortkeys = 1;
    local $Data::Dumper::Deepcopy = 1;
    local $Data::Dumper::Indent   = 1;
    
    return Data::Dumper->Dump( [ $params ], [ qq(*unsubstituted_param_hash $label) ] );
}
 
1;