Standard library of RunnablesΒΆ
Several Runnables are included in the standard eHive distribution, providing a library of components that can be helpful when creating pipelines. All of these are located in the directory modules/Bio/EnsEMBL/Hive/RunnableDB/. In addition, there are Runnables included with the examples under modules/Bio/EnsEMBL/Hive/Examples/. Although those are written to fit into specific example pipelines to illustrate specific eHive concepts, you may find them useful in your own pipelines.
The included examples are:
- Bio::EnsEMBL::Hive::RunnableDB::DatabaseDumper
- Bio::EnsEMBL::Hive::RunnableDB::DbCmd
- Bio::EnsEMBL::Hive::RunnableDB::Dummy
- Bio::EnsEMBL::Hive::RunnableDB::FastaFactory
- Bio::EnsEMBL::Hive::RunnableDB::JobFactory
- Bio::EnsEMBL::Hive::RunnableDB::MySQLTransfer
- Bio::EnsEMBL::Hive::RunnableDB::NotifyByEmail
- Bio::EnsEMBL::Hive::RunnableDB::SlackNotification
- Bio::EnsEMBL::Hive::RunnableDB::SqlCmd
- Bio::EnsEMBL::Hive::RunnableDB::SqlHealthcheck
- Bio::EnsEMBL::Hive::RunnableDB::SystemCmd