Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor Member List

This is the complete list of members for Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor, including all inherited members.

_bind_param_generic_fetch()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_build_id_cache()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_can_straight_join()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_check_start_end_strand()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_clear_slice_feature_cache()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_columns()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_compute_midpoint()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_compute_nearest_end()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_compute_prime_distance()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_create_feature()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_create_feature_fast()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_default_where_clause()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_discard_excess_features_from_matrix()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_final_clause()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_generate_feature_bounds()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_generate_sql()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_get_and_filter_Slice_projections()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_get_by_Slice()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_id_cache()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_left_join()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_list_dbIDs()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_list_seq_region_ids()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_logic_name_to_constraint()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_max_feature_length()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_no_id_cache()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_objs_from_sth()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_pre_store()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_pre_store_userdata()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_remap()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_seq_region_boundary_from_db()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_slice_feature_cache()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_slice_fetch()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
_straight_join()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_tables()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_uncached_fetch_all_by_dbID_list()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_uncached_fetch_all_by_id_list()	Bio::EnsEMBL::DBSQL::BaseAdaptor
_uncached_fetch_by_dbID()	Bio::EnsEMBL::DBSQL::BaseAdaptor
bind_param_generic_fetch()	Bio::EnsEMBL::DBSQL::BaseAdaptor
clear_cache()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
count_by_Slice_constraint()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
db()	Bio::EnsEMBL::DBSQL::BaseAdaptor
dbc()	Bio::EnsEMBL::DBSQL::BaseAdaptor
fetch_all()	Bio::EnsEMBL::DBSQL::BaseAdaptor
fetch_all_by_dbID_list()	Bio::EnsEMBL::DBSQL::BaseAdaptor
fetch_all_by_hit_name()	Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor
fetch_all_by_hit_name_unversioned()	Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor
fetch_all_by_logic_name()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_all_by_outward_search()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_all_by_Slice()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_all_by_Slice_and_external_db()	Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor
fetch_all_by_Slice_and_hcoverage()	Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor
fetch_all_by_Slice_and_pid()	Bio::EnsEMBL::DBSQL::BaseAlignFeatureAdaptor
fetch_all_by_Slice_and_score()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_all_by_Slice_constraint()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_all_by_stable_id_list()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_all_nearest_by_Feature()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_by_dbID()	Bio::EnsEMBL::DBSQL::BaseAdaptor
fetch_Iterator_by_Slice()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_Iterator_by_Slice_method()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
fetch_nearest_by_Feature()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
generate_in_constraint()	Bio::EnsEMBL::DBSQL::BaseAdaptor
generic_count()	Bio::EnsEMBL::DBSQL::BaseAdaptor
generic_fetch()	Bio::EnsEMBL::DBSQL::BaseAdaptor
get_seq_region_id_external()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
get_seq_region_id_internal()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
ignore_cache_override()	Bio::EnsEMBL::DBSQL::BaseAdaptor
insert_ignore_clause()	Bio::EnsEMBL::DBSQL::BaseAdaptor
is_multispecies()	Bio::EnsEMBL::DBSQL::BaseAdaptor
last_insert_id()	Bio::EnsEMBL::DBSQL::BaseAdaptor
new()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
prepare()	Bio::EnsEMBL::DBSQL::BaseAdaptor
remove()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
remove_by_analysis_id()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
remove_by_feature_id()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
remove_by_Slice()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
schema_version()	Bio::EnsEMBL::DBSQL::BaseAdaptor
select_nearest()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
species_id()	Bio::EnsEMBL::DBSQL::BaseAdaptor
start_equals_end()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor
store()	Bio::EnsEMBL::DBSQL::BaseFeatureAdaptor